SGB - The Spirochetes Genome Browser - Gene list

Title

+ Borrelia afzelii, PKo

+ Borrelia burgdorferi ZS7, ZS7

+ Borrelia burgdorferi, B31

+ Borrelia duttonii Ly, Ly

+ Borrelia garinii High passage (300), PBi

+ Borrelia garinii, PBi

+ Borrelia hermsii DAH, DAH

+ Borrelia recurrentis A1, A1

+ Borrelia turicatae 91E135, 91E135

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Ames), Patoc 1 (Ames)

+ Leptospira biflexa serovar Patoc strain Patoc 1 (Paris), Patoc 1 (Paris)

+ Leptospira borgpetersenii serovar Hardjo-bovis JB197, JB197

+ Leptospira borgpetersenii serovar Hardjo-bovis L550, L550

+ Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130

+ Leptospira interrogans serovar lai str. 56601

+ Treponema denticola ATCC 35405

+ Treponema pallidum

+ Treponema pallidum subsp. pallidum SS14, SS14

+ COG functional categories

+ (Clickable) linear whole genome views

+ Horizontal gene transfer (predicted by SIGI-HMM)

+ Sequence retrieval

+ Advanced search

+ Sequence similarity search

+ Best bidirectional hits (protein-based analysis)

+ Gene core sets (protein-based analysis)

+ Gene partnerships (DNA-based analysis)

+ Protein variations (protein-based analysis)

+ Synteny analysis (protein-based analysis)

+ Gene conservation (protein-based analysis)

+ Codon and amino acid usages (DNA- and protein-based analysis)

+ Alignments of whole reference and target genomic elements (DNA-based analysis)

Gene list

Applied filters:

COG category: Extracellular structures

Number of genes found: 8

Free access


Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View in Fasta format (Protein)

Borrelia garinii High passage (300), PBi

Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
ospB	PBI300a20b10.r1_22	outer surface protein B	PBI300a20b10.r1	CDS	13631	885	+	0.329944

Borrelia garinii, PBi
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
ospB	BGA15	outer surface protein B	lp54	CDS	10531	885	+	0.329944

Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	LIC10495	cytoplasmic membrane protein	chromosome I	CDS	575873	1827	-	0.413246
NA	LIC11030	putative lipoprotein	chromosome I	CDS	1269359	1035	-	0.390338

Leptospira interrogans serovar lai str. 56601
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA		conserved hypothetical protein	chromosome I	CDS	3244556	1395	+	0.392832
NA		putative lipoprotein	chromosome I	CDS	3025903	1035	+	0.390338
NA		conserved hypothetical protein	chromosome I	CDS	3700206	1827	+	0.410509

Treponema denticola ATCC 35405
Name	Locus tag	Product / Description	Genomic element	Type	Begin	Length	Strand	GC-content
NA	TDE2709	BNR domain protein	chromosome	CDS	2761784	4665	-	0.377278