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2024-05-21 15:25:14

Gene list

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COG category: Intracellular trafficking and secretion

Number of genes found: 248

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Borrelia garinii High passage (300), PBi
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
lepB-1 NC_006156.1_30 signal peptidase INC_006156.1 CDS27711 636 - 0.232704
ospB PBI300a20b10.r1_22 outer surface protein BPBI300a20b10.r1 CDS13631 885 + 0.329944
 
Borrelia garinii, PBi
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA BG0301 smg proteinchromosome linear CDS304538 858 - 0.300699
flhA BG0274 flagellar biosynthesis proteinchromosome linear CDS282648 2091 - 0.322812
fliI BG0291 flagellum-specific ATP synthasechromosome linear CDS296242 1311 - 0.320366
lepB-1 BG0030 signal peptidase Ichromosome linear CDS27712 636 - 0.232704
lepB-2 BG0031 signal peptidase Ichromosome linear CDS28349 981 - 0.292559
lepB-3 BG0266 signal peptidase Ichromosome linear CDS275448 393 + 0.231552
ospB BGA15 outer surface protein Blp54 CDS10531 885 + 0.329944
secA BG0152 preprotein translocase subunitchromosome linear CDS153281 2700 - 0.332963
secD BG0675 protein-export membrane proteinchromosome linear CDS692898 1671 + 0.327947
secY BG0510 preprotein translocase subunitchromosome linear CDS507876 1305 + 0.297318
 
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LIC10558 conserved hypothetical proteinchromosome I CDS684092 441 + 0.346939
NA LIC11030 putative lipoproteinchromosome I CDS1269359 1035 - 0.390338
NA LIC11028 conserved hypothetical proteinchromosome I CDS1260519 7767 + 0.344921
NA LIC11718 protease IVchromosome I CDS2091080 1740 + 0.323563
NA LIC10890 biopolymer transport proteinchromosome I CDS1074549 411 - 0.381995
NA LIC12693 conserved hypothetical proteinchromosome I CDS3272518 1674 + 0.36141
NA LIC11951 ATP-dependent CLP protease-like, proteolytic subunitchromosome I CDS2359332 594 - 0.397306
NA LIC12736 putative lipoproteinchromosome I CDS3331889 795 - 0.359748
NA LIC11622 biopolymer transport exbd-related transmembrane proteinchromosome I CDS1984769 450 + 0.364444
NA LIC12794 conserved hypothetical proteinchromosome I CDS3401687 528 - 0.422348
NA LIC10868 conserved hypothetical proteinchromosome I CDS1046489 1395 + 0.398566
NA LIC12049 conserved hypothetical proteinchromosome I CDS2479593 825 + 0.370909
NA LIC12990 conserved hypothetical proteinchromosome I CDS3633933 1380 - 0.336232
NA LIC11569 conserved hypothetical proteinchromosome I CDS1928812 909 + 0.39714
NA LIC10892 biopolymer transport exbB-like proteinchromosome I CDS1075408 813 - 0.399754
NA LIC10496 conserved hypothetical proteinchromosome I CDS577711 1530 - 0.354902
NA LIC13400 conserved hypothetical proteinchromosome I CDS4168449 816 - 0.534314
NA LIC11576 conserved hypothetical proteinchromosome I CDS1936034 645 + 0.384496
NA LIC10891 biopolymer transport proteinchromosome I CDS1074962 438 - 0.356164
NA LIC11122 putative lipoproteinchromosome I CDS1386042 609 + 0.415435
NA LIC20170 MotA/TolQ/ExbB proton channel familychromosome II CDS205585 528 - 0.346591
NA LIC10050 peptidoglycan-associated cytoplasmic membrane proteinchromosome I CDS60404 2064 - 0.359981
NA LIC20169 ExbD/TolR biopolymer transport proteinchromosome II CDS205175 414 - 0.311594
NA LIC12575 cytoplasmic membrane proteinchromosome I CDS3122795 1578 + 0.370722
NA LIC10495 cytoplasmic membrane proteinchromosome I CDS575873 1827 - 0.413246
NA LIC12307 outer membrane TolC superfamilychromosome I CDS2781437 1461 - 0.378508
NA LIC11578 FtsAchromosome I CDS1938023 1623 + 0.345656
NA LIC11575 conserved hypothetical proteinchromosome I CDS1935488 537 + 0.405959
NA LIC11846 flagellar motor switch proteinchromosome I CDS2240718 537 - 0.456238
NA LIC13066 putative lipoproteinchromosome I CDS3742428 1428 + 0.367647
NA LIC10616 DNA processing chain Achromosome I CDS754189 984 + 0.367886
NA LIC10157 conserved hypothetical proteinchromosome I CDS185410 1884 + 0.34448
NA LIC11233 signal peptidase Ichromosome I CDS1526494 1002 + 0.39022
clpP LIC11417 ATP-dependent Clp protease, proteolytic subunitchromosome I CDS1743348 597 + 0.38191
czcC LIC11941 heavy metal efflux pumpchromosome I CDS2349899 1455 - 0.373883
exbB LIC20216 ExbBchromosome II CDS277118 615 + 0.382114
exbD LIC20217 ExbDchromosome II CDS277821 405 + 0.432099
flhA LIC11376 flagellar biosynthesis transmembrane proteinchromosome I CDS1692815 2118 + 0.406043
flhB LIC11375 flagellar proteinchromosome I CDS1690856 1950 + 0.366667
fliE LIC10297 flagellar hook-basal body complex proteinchromosome I CDS340569 384 - 0.388021
fliF LIC11392 FliFchromosome I CDS1709642 1701 + 0.390947
fliH LIC11394 flagellar assembly proteinchromosome I CDS1712314 924 + 0.411255
fliI LIC11391 FliIchromosome I CDS1707012 1365 - 0.41685
fliJ LIC11390 FliJchromosome I CDS1706442 567 - 0.343915
fliN LIC11370 flagellar motor switch proteinchromosome I CDS1687104 1065 + 0.433803
fliP LIC11372 flagellar protein export systemchromosome I CDS1689019 804 + 0.375622
fliQ LIC11373 flagellar biosynthetic protein fliQchromosome I CDS1689819 264 + 0.337121
fliR LIC11374 flagellar biosynthetic proteinchromosome I CDS1690089 780 + 0.384615
fliS LIC11657 FliSchromosome I CDS2022767 453 + 0.390728
gspD LIC11570 general secretory pathway protein Dchromosome I CDS1929725 1791 + 0.373534
gspE LIC11571 general secretory pathway protein Echromosome I CDS1931519 1674 + 0.402628
gspF LIC11572 general secretory pathway protein Fchromosome I CDS1933198 1227 + 0.383863
gspG LIC11573 general secretory pathway protein Gchromosome I CDS1934446 477 + 0.415094
lepB LIC10478 signal peptidase Ichromosome I CDS552136 597 - 0.350084
lspA LIC12389 lipoprotein signal peptidasechromosome I CDS2894108 549 - 0.36612
pfaP LIC13092 PfaPchromosome I CDS3782834 729 + 0.390947
pilD LIC12423 prepilin leader peptidasechromosome I CDS2942655 852 + 0.329812
secA LIC11944 SecAchromosome I CDS2352392 2733 - 0.384925
secD LIC12538 SecDchromosome I CDS3076709 1929 - 0.393468
secE LIC10747 SecEchromosome I CDS909064 189 + 0.402116
secF LIC12537 SecFchromosome I CDS3075766 969 - 0.359133
secY LIC12853 SecYchromosome I CDS3458869 1383 - 0.383225
sipA LIC12086 signal peptidase Ichromosome I CDS2524784 561 + 0.370766
sppA LIC11793 signal peptide peptidasechromosome I CDS2186279 987 + 0.358663
tatA LIC11980 sec-independent protein secretion pathway componentchromosome I CDS2385967 273 + 0.399267
tatC LIC11981 sec-independent protein translocasechromosome I CDS2386236 801 + 0.358302
tolC LIC13135 outer membrane proteinchromosome I CDS3843112 2031 + 0.325948
tolQ LIC11621 biopolymer transport proteinchromosome I CDS1984161 606 + 0.376238
yajC LIC12540 YajCchromosome I CDS3079391 327 - 0.385321
 
Leptospira interrogans serovar lai str. 56601
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA hypothetical proteinchromosome I CDS2345403 537 - 0.409683
NA outer membrane efflux proteinchromosome I CDS3698773 1422 + 0.357243
NA outer membrane efflux proteinchromosome I CDS1101040 1602 - 0.370787
NA surface protein Lk90-like proteinchromosome I CDS3044798 5871 + 0.420371
NA conserved hypothetical proteinchromosome I CDS24156 1683 + 0.402852
NA outer membrane protein OmpA familychromosome I CDS60207 2064 - 0.36095
NA mttA/Hcf106 family proteinchromosome I CDS1896826 273 - 0.395604
NA hypothetical proteinchromosome I CDS829998 492 + 0.426829
NA biopolymer transport protein, putativechromosome I CDS2298533 606 - 0.376238
NA outer membrane efflux proteinchromosome I CDS955645 1674 - 0.362007
NA Type III leader peptidase family proteinchromosome I CDS1282628 852 - 0.328638
NA flagellar protein FliJ-like proteinchromosome I CDS2580179 567 + 0.343915
NA SMF proteinchromosome I CDS3534058 984 - 0.368902
NA hypothetical proteinchromosome I CDS2344749 645 - 0.386046
NA outer membrane efflux proteinchromosome I CDS587366 1380 + 0.336232
NA putative outermembrane proteinchromosome I CDS1748471 2121 - 0.38331
NA outer membrane protein precursor CzcCchromosome I CDS1931541 1455 + 0.378007
NA conserved hypothetical proteinchromosome I CDS1145711 327 + 0.385321
NA Outer membrane efflux proteinchromosome I CDS1445541 1461 + 0.377139
NA TolR proteinchromosome I CDS3217183 438 + 0.356164
NA hypothetical proteinchromosome I CDS3387715 189 - 0.402116
NA conserved hypothetical proteinchromosome I CDS3700206 1827 + 0.410509
NA 60Kd inner membrane proteinchromosome I CDS185139 1884 + 0.343418
NA putative lipoproteinchromosome I CDS3025903 1035 + 0.390338
NA conserved hypothetical proteinchromosome I CDS3606344 483 - 0.356108
NA conserved hypothetical proteinchromosome I CDS3244556 1395 + 0.392832
NA hypothetical proteinchromosome I CDS897962 795 + 0.359748
NA biopolymer transport protein, putativechromosome I CDS3216362 813 + 0.402214
FliQ Flagellar biosynthetic protein FliQchromosome I CDS2597110 264 - 0.333333
FliR flagellar biosynthetic protein fliRchromosome I CDS2596324 780 - 0.383333
LB214 MotA/ExbB proton channel family proteinchromosome II CDS207376 528 - 0.348485
clpP1 ATP-dependent Clp protease, proteolytic subunitchromosome I CDS1923122 441 + 0.414966
clpP2 Protease subunit of ATP-dependent Clp proteaseschromosome I CDS2543294 597 - 0.38526
epsC general secretion pathway protein Cchromosome I CDS2351707 909 - 0.39714
epsD General secretory pathway protein Dchromosome I CDS2349912 1848 - 0.373377
epsE general secretion pathway protein Echromosome I CDS2348235 1674 - 0.403226
epsF General secretory pathway protein Fchromosome I CDS2347003 1227 - 0.384678
epsG General secretory pathway protein Gchromosome I CDS2346505 477 - 0.408805
exbB transport protein ExbBchromosome II CDS281387 615 + 0.380488
exbD1 Biopolymer transport exbD protein.chromosome I CDS3217623 411 + 0.381995
exbD2 putative biopolymer transport proteinchromosome II CDS206966 414 - 0.31401
exbD3 transport protein ExbDchromosome II CDS282091 405 + 0.434568
flhA Flagellar biosynthesis protein FlhAchromosome I CDS2592260 2118 - 0.40746
flhB2 flagellar protein FlhBchromosome I CDS2594387 1950 - 0.366154
fliE Flagellar hook-basal body proteinchromosome I CDS341671 384 - 0.385417
fliF flagellar MS-ring proteinchromosome I CDS2575847 1698 - 0.391048
fliH flagellar biosynthesis/type III secretory pathway proteinchromosome I CDS2573952 924 - 0.412338
fliI flagellum-specific ATP synthase fliIchromosome I CDS2578811 1365 + 0.41685
fliN Flagellar motor switch protein fliNchromosome I CDS2041972 318 + 0.41195
fliP flagellar biosynthesis proteinchromosome I CDS2597370 804 - 0.376866
fliS Flagellar protein FliSchromosome I CDS2258747 453 - 0.390728
fliY flagellar motor switch protein fliYchromosome I CDS2599024 1065 - 0.435681
ftsA2 cell-division protein ftsAchromosome I CDS2341782 1623 - 0.345656
lepB Signal peptidase Ichromosome I CDS2766322 1002 - 0.39022
lspA Lipoprotein signal peptidasechromosome I CDS1331966 549 + 0.36612
secA preprotein translocase SecA subunitchromosome I CDS1927770 2733 + 0.384193
secD Preprotein translocase subunit SecDchromosome I CDS1146815 1905 + 0.394226
secF Preprotein translocase subunit SecFchromosome I CDS1148694 969 + 0.360165
secY preprotein translocase secYchromosome I CDS771164 1383 + 0.38684
sipA Signal peptidase Ichromosome I CDS1705062 480 - 0.377083
sipC Signal peptidase Ichromosome I CDS3725147 597 + 0.350084
sppA1 Putative signal peptide peptidase sppAchromosome I CDS2095192 987 - 0.357649
sppA2 Putative signal peptide peptidase sppAchromosome I CDS2189875 1740 - 0.323563
sppA3 Putative signal peptide peptidase sppAchromosome I CDS3837244 954 + 0.396226
tatC Sec-independent protein translocase protein tatCchromosome I CDS1896029 801 - 0.354557
tolB TolB protein precursorchromosome I CDS3028010 7767 - 0.344406
tolC Outer membrane protein tolC precursorchromosome I CDS3900728 2031 + 0.327425
tolR ExbD/TolR family proteinchromosome I CDS2298081 450 - 0.362222
 
Treponema denticola ATCC 35405
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA TDE1465 signal peptidase I, putativechromosome CDS1513704 702 + 0.347578
NA TDE1985 hypothetical proteinchromosome CDS1997645 2775 - 0.394595
NA TDE1556 conserved domain proteinchromosome CDS1598927 1203 + 0.329177
NA TDE2429 hypothetical proteinchromosome CDS2456718 1410 - 0.335461
NA TDE0741 hypothetical proteinchromosome CDS776275 1974 - 0.519757
NA TDE1217 flagellar assembly protein fliH, putativechromosome CDS1249651 927 + 0.358145
NA TDE1636 surface antigen, putativechromosome CDS1683607 2439 - 0.385404
NA TDE1362 hypothetical proteinchromosome CDS1401132 3072 + 0.388021
NA TDE0902 conserved hypothetical proteinchromosome CDS919470 753 - 0.405046
NA TDE2313 hypothetical proteinchromosome CDS2349596 2505 - 0.447106
NA TDE1207 DNA processing protein DprA, putativechromosome CDS1239376 933 + 0.39657
NA TDE1219 flagellar protein FliJ, putativechromosome CDS1252011 465 + 0.288172
NA TDE1436 inner membrane proteinchromosome CDS1479600 2751 + 0.349691
NA TDE1933 hypothetical proteinchromosome CDS1949690 3012 - 0.466135
NA TDE2396 inner membrane proteinchromosome CDS2423740 1749 - 0.394511
NA TDE1642 conserved hypothetical proteinchromosome CDS1692861 717 - 0.337517
NA TDE2276 hypothetical proteinchromosome CDS2312035 732 - 0.32377
NA TDE1505 membrane protein, putativechromosome CDS1553754 444 + 0.382883
NA TDE2709 BNR domain proteinchromosome CDS2761784 4665 - 0.377278
NA TDE1983 hypothetical proteinchromosome CDS1993466 2964 - 0.423077
NA TDE1313 signal peptidase Ichromosome CDS1350790 537 + 0.359404
NA TDE2419 conserved hypothetical proteinchromosome CDS2444113 747 - 0.404284
NA TDE2153 conserved hypothetical proteinchromosome CDS2189199 465 - 0.415054
NA TDE0626 hypothetical proteinchromosome CDS658230 1515 + 0.39868
clpP-1 TDE1672 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS1726432 594 + 0.427609
clpP-2 TDE2388 ATP-dependent Clp protease, proteolytic subunit ClpPchromosome CDS2417877 603 + 0.396352
ffh TDE2089 signal recognition particle proteinchromosome CDS2116322 1332 - 0.448198
flhA TDE0055 flagellar biosynthesis protein FlhAchromosome CDS63705 2097 + 0.423462
flhB TDE0054 flagellar biosynthetic protein FlhBchromosome CDS62524 1173 + 0.391304
fliE TDE1214 flagellar hook-basal body complex protein FliEchromosome CDS1246447 366 + 0.379781
fliF TDE1215 flagellar M-ring protein FliFchromosome CDS1246876 1704 + 0.3973
fliI TDE1218 flagellum-specific ATP synthase FliIchromosome CDS1250587 1425 + 0.414035
fliP TDE2760 flagellar biosynthesis protein FliPchromosome CDS2815156 816 - 0.371324
fliQ TDE0052 flagellar biosynthetic protein FliQchromosome CDS61445 270 + 0.362963
fliR TDE0053 flagellar biosynthetic protein FliRchromosome CDS61733 795 + 0.392453
fliS TDE0119 flagellar protein FliSchromosome CDS137148 441 - 0.371882
fliY TDE2762 flagellar motor switch protein FliYchromosome CDS2816653 1182 - 0.445008
ftsY TDE2043 signal recognition particle-docking protein FtsYchromosome CDS2072270 879 - 0.397042
lspA TDE2615 lipoprotein signal peptidasechromosome CDS2657236 522 - 0.37931
secA TDE1898 preprotein translocase, SecA subunitchromosome CDS1918212 2769 - 0.43048
secD TDE0681 protein-export membrane protein SecDchromosome CDS718946 1764 - 0.404762
secE TDE2427 preprotein translocase, SecE subunitchromosome CDS2455893 180 - 0.383333
secF TDE0680 protein-export membrane protein SecFchromosome CDS717703 1242 - 0.39533
secY TDE0787 preprotein translocase, SecY subunitchromosome CDS815208 1317 + 0.414579
sppA TDE0306 signal peptide peptidase SppAchromosome CDS336880 1830 - 0.401093
yajC TDE0682 preprotein translocase, YajC subunitchromosome CDS720755 414 - 0.400966
 
Treponema pallidum
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
TP0185 signal peptidase I (sip)chromosome CDS201075 708 + 0.533898
TP0208 preprotein translocase subunit (secY)chromosome CDS213739 1353 + 0.490761
TP0235 preprotein translocase subunit (secE)chromosome CDS242310 180 + 0.538889
TP0379 preprotein translocase subunit (secA)chromosome CDS402404 2751 - 0.51763
TP0393 smf protein (smf)chromosome CDS417663 909 + 0.49725
TP0398 flagellar hook-basal body complex protein (fliE)chromosome CDS422773 375 + 0.48
TP0399 flagellar basal-body M ring protein (fliF)chromosome CDS423264 1704 + 0.501174
TP0401 flagellar assembly protein (fliH)chromosome CDS426078 930 + 0.510753
TP0402 flagellum-specific ATP synthase (fliI)chromosome CDS427035 1344 + 0.553571
TP0410 protein-export membrane protein (secD)chromosome CDS435457 1752 + 0.535959
TP0411 protein-export membrane protein (secF)chromosome CDS437205 1263 + 0.542359
TP0416 signal recognition particle protein (ffh)chromosome CDS442684 1359 - 0.550405
TP0507 ATP-dependent Clp protease proteolytic component (clpP-1)chromosome CDS542452 612 + 0.529412
TP0578 cell division protein (ftsY)chromosome CDS628651 888 + 0.543919
TP0714 flagellar biosynthesis protein (flhA)chromosome CDS781513 2124 - 0.429849
TP0715 flagellar biosynthetic protein (flhB)chromosome CDS783645 1131 - 0.415561
TP0716 flagellar biosynthetic protein (fliR)chromosome CDS784772 798 - 0.437343
TP0717 flagellar biosynthetic protein (fliQ)chromosome CDS785582 285 - 0.477193
TP0718 flagellar biosynthetic protein (fliP)chromosome CDS785885 816 - 0.485294
TP0720 flagellar motor switch protein (fliY)chromosome CDS787421 1047 - 0.52531
TP0926 signal peptidase I, putativechromosome CDS1006290 1539 - 0.562703
TP0943 flagellar protein (fliS)chromosome CDS1025190 447 - 0.512304
TP0949 membrane proteinchromosome CDS1029904 1998 - 0.513013
TP0978 signal peptidase II (lsp)chromosome CDS1061478 594 + 0.5
TP0988 conserved hypothetical integral membrane proteinchromosome CDS1071733 837 + 0.519713
TP0997 protease IV (sppA)chromosome CDS1082643 1797 - 0.510295
TP1041 ATP-dependent Clp protease proteolytic component (clpP-2)chromosome CDS1137219 714 - 0.47479
 
Treponema pallidum subsp. pallidum SS14, SS14
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA TPASS_0988 hypothetical integral membrane proteinchromosome CDS1073178 837 + 0.519713
NA TPASS_0926 possible signal peptidase Ichromosome CDS1007735 1539 - 0.562703
NA TPASS_0949 membrane proteinchromosome CDS1031349 1998 - 0.513013
clpP1 TPASS_0507 ATP-dependent Clp protease proteolytic componentchromosome CDS543884 612 + 0.527778
clpP2 TPASS_1041 ATP-dependent Clp protease proteolytic componentchromosome CDS1138665 714 - 0.47479
ffh TPASS_0416 signal recognition particle proteinchromosome CDS443864 1359 - 0.550405
flhA TPASS_0714 flagellar biosynthesis proteinchromosome CDS782961 2124 - 0.429849
flhB TPASS_0715 flagellar biosynthetic proteinchromosome CDS785093 1131 - 0.415561
fliE TPASS_0398 flagellar hook-basal body complex proteinchromosome CDS423953 375 + 0.48
fliF TPASS_0399 flagellar basal-body M ring proteinchromosome CDS424444 1704 + 0.501174
fliH TPASS_0401 flagellar assembly proteinchromosome CDS427258 930 + 0.510753
fliI TPASS_0402 flagellum-specific ATP synthasechromosome CDS428215 1344 + 0.553571
fliP TPASS_0718 flagellar biosynthetic proteinchromosome CDS787333 816 - 0.485294
fliQ TPASS_0717 flagellar biosynthetic proteinchromosome CDS787030 285 - 0.477193
fliR TPASS_0716 flagellar biosynthetic proteinchromosome CDS786220 798 - 0.437343
fliS TPASS_0943 flagellar proteinchromosome CDS1026635 447 - 0.512304
fliY TPASS_0720 flagellar motor switch proteinchromosome CDS788869 1047 - 0.52531
ftsY TPASS_0578 cell division proteinchromosome CDS630101 888 + 0.543919
secA TPASS_0379 preprotein translocase subunitchromosome CDS403584 2751 - 0.51763
secD TPASS_0410 protein-export membrane proteinchromosome CDS436637 1752 + 0.535959
secE TPASS_0235 preprotein translocase subunitchromosome CDS243493 180 + 0.538889
secF TPASS_0411 protein-export membrane proteinchromosome CDS438385 1263 + 0.542359
secY TPASS_0208 preprotein translocase subunitchromosome CDS214922 1353 + 0.490761
sip TPASS_0185 signal peptidase Ichromosome CDS202258 708 + 0.533898
smf TPASS_0393 protein Smfchromosome CDS418843 909 + 0.49725
sppA TPASS_0997 protease IVchromosome CDS1084088 1797 - 0.510295